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LOC6546161 fringe glycosyltransferase [ Drosophila erecta ]

Gene ID: 6546161, updated on 10-May-2024

Summary

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Gene symbol
LOC6546161
Gene description
fringe glycosyltransferase
Locus tag
Dere_GG13275
See related
EnsemblRapid:LOC6546161
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG13275; GG13275-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6546161 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825198.1 (20897873..20920947, complement)

NW_020825198.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC26526569 Neighboring gene ctenidin-3 Neighboring gene uncharacterized LOC6546162 Neighboring gene seminase Neighboring gene nardilysin Neighboring gene seminase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825198 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fringe glycosyltransferase
Names
Dere\GG13275
Dere\GG13275-PA
dere_GLEANR_13555

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825198.1 Reference DereRS2

    Range
    20897873..20920947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001973519.3 → XP_001973555.1  fringe glycosyltransferase

    See identical proteins and their annotated locations for XP_001973555.1

    UniProtKB/TrEMBL
    B3NIT5
    Related
    XP_001973555.1, XM_001973519.3
    Conserved Domains (1) summary
    pfam02434
    Location:145 → 394
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

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Research Materials