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LOC6545124 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Drosophila erecta ]

Gene ID: 6545124, updated on 10-May-2024

Summary

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Gene symbol
LOC6545124
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Locus tag
Dere_GG14746
See related
EnsemblRapid:LOC6545124
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG14746; GG14746-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6545124 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825198.1 (918958..920297)

NW_020825198.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific protease 10 Neighboring gene monocarboxylate transporter 12 Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 Neighboring gene uncharacterized LOC6545125 Neighboring gene nervous fingers 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825198 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Names
Dere\GG14746
Dere\GG14746-PA
dere_GLEANR_14887

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825198.1 Reference DereRS2

    Range
    918958..920297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001971034.3 → XP_001971070.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    See identical proteins and their annotated locations for XP_001971070.1

    UniProtKB/TrEMBL
    B3NJD4
    Related
    XP_001971070.1, XM_001971034.3
    Conserved Domains (1) summary
    cl21608
    Location:77 → 227
    Galactosyl_T; Galactosyltransferase

  2. XM_026977671.1 → XP_026833472.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    Related
    XP_026833472.1, XM_026977671.1
    Conserved Domains (1) summary
    cl21608
    Location:77 → 227
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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Research Materials