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rt Protein O-mannosyltransferase rt [ Drosophila erecta ]

Gene ID: 6544542, updated on 22-May-2024

Summary

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Gene symbol
rt
Gene description
Protein O-mannosyltransferase rt
Locus tag
Dere_GG13909
See related
EnsemblRapid:LOC6544542
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG13909; GG13909-PA
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825198.1 (11822540..11826202, complement)

NW_020825198.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6544540 Neighboring gene uncharacterized LOC6544541 Neighboring gene uncharacterized LOC6544544 Neighboring gene vascular endothelial zinc finger 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825198 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyltransferase 1
Names
Dere\GG13909
Dere\GG13909-PA
dere_GLEANR_14130

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825198.1 Reference DereRS2

    Range
    11822540..11826202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001972368.3 → XP_001972404.1  protein O-mannosyltransferase 1

    See identical proteins and their annotated locations for XP_001972404.1

    UniProtKB/TrEMBL
    B3NGX3
    Related
    XP_001972404.1, XM_001972368.3
    Conserved Domains (4) summary
    smart00472
    Location:590 → 646
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:184 → 881
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:182 → 425
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:676 → 879
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
Heading Accession and Version

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