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LOC6543430 laminin subunit alpha-1 [ Drosophila erecta ]

Gene ID: 6543430, updated on 10-May-2024

Summary

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Gene symbol
LOC6543430
Gene description
laminin subunit alpha-1
Locus tag
Dere_GG23914
See related
EnsemblRapid:LOC6543430
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG23914; GG23914-PA; GG23914-PB
Orthologs
fruit fly all
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Genomic context

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See LOC6543430 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825200.1 (11407057..11473429, complement)

NW_020825200.1Genomic Context describing neighboring genes Neighboring gene non-lysosomal glucosylceramidase Neighboring gene uncharacterized LOC26526823 Neighboring gene male sterile (2) 34Fe Neighboring gene mediator of RNA polymerase II transcription subunit 22 Neighboring gene uncharacterized LOC113564036 Neighboring gene Dual-specificity tyrosine phosphorylation-regulated kinase 2 Neighboring gene uncharacterized LOC6543505

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825200 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-1; laminin subunit alpha-2
Names
Dere\GG23914
Dere\GG23914-PA
Dere\GG23914-PB
dere_GLEANR_8692

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825200.1 Reference DereRS2

    Range
    11407057..11473429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026978196.1 → XP_026833997.1  laminin subunit alpha-1 isoform X1

    UniProtKB/TrEMBL
    B3N9T6
    Related
    XP_026833997.1, XM_026978196.1
    Conserved Domains (10) summary
    smart00180
    Location:500 → 544
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1663 → 1710
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:3186 → 3341
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1193 → 1241
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:2271 → 2394
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1480 → 1620
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:162 → 390
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam02210
    Location:2798 → 2938
    Laminin_G_2; Laminin G domain
    cl22861
    Location:2393 → 2486
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl27446
    Location:1927 → 2277
    Dynamin_M; Dynamin central region

  2. XM_026978197.1 → XP_026833998.1  laminin subunit alpha-2 isoform X2

    UniProtKB/TrEMBL
    B3N9T6
    Related
    XP_026833998.1, XM_026978197.1
    Conserved Domains (10) summary
    smart00180
    Location:158 → 202
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1321 → 1368
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2844 → 2999
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:851 → 899
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:1929 → 2052
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1138 → 1278
    Laminin_B; Laminin B (Domain IV)
    pfam02210
    Location:2456 → 2596
    Laminin_G_2; Laminin G domain
    cl02806
    Location:3 → 48
    Laminin_N; Laminin N-terminal (Domain VI)
    cl22861
    Location:2051 → 2144
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl27446
    Location:1585 → 1935
    Dynamin_M; Dynamin central region

  3. XM_015159482.2 → XP_015014968.1  laminin subunit alpha-1 isoform X4

    UniProtKB/TrEMBL
    A0A0Q5WAC0
    Related
    XP_015014968.1, XM_015159482.2
    Conserved Domains (8) summary
    cd00055
    Location:853 → 900
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2376 → 2531
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:383 → 431
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:1461 → 1584
    Laminin_II; Laminin Domain II
    pfam00052
    Location:670 → 810
    Laminin_B; Laminin B (Domain IV)
    pfam02210
    Location:1988 → 2128
    Laminin_G_2; Laminin G domain
    cl22861
    Location:1583 → 1676
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl27446
    Location:1117 → 1467
    Dynamin_M; Dynamin central region

  4. XM_026978199.1 → XP_026834000.1  laminin subunit alpha-1 isoform X4

    UniProtKB/TrEMBL
    A0A0Q5WAC0
    Related
    XP_026834000.1, XM_026978199.1
    Conserved Domains (8) summary
    cd00055
    Location:853 → 900
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2376 → 2531
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:383 → 431
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:1461 → 1584
    Laminin_II; Laminin Domain II
    pfam00052
    Location:670 → 810
    Laminin_B; Laminin B (Domain IV)
    pfam02210
    Location:1988 → 2128
    Laminin_G_2; Laminin G domain
    cl22861
    Location:1583 → 1676
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl27446
    Location:1117 → 1467
    Dynamin_M; Dynamin central region

  5. XM_026978198.1 → XP_026833999.1  laminin subunit alpha-2 isoform X3

    UniProtKB/TrEMBL
    B3N9T6
    Related
    XP_026833999.1, XM_026978198.1
    Conserved Domains (10) summary
    smart00180
    Location:500 → 544
    EGF_Lam; Laminin-type epidermal growth factor-like domai
    cd00055
    Location:1663 → 1710
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00110
    Location:2580 → 2747
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:1193 → 1241
    Laminin_EGF; Laminin EGF domain
    pfam06009
    Location:2271 → 2394
    Laminin_II; Laminin Domain II
    pfam00052
    Location:1480 → 1620
    Laminin_B; Laminin B (Domain IV)
    pfam00055
    Location:162 → 390
    Laminin_N; Laminin N-terminal (Domain VI)
    pfam02210
    Location:2798 → 2938
    Laminin_G_2; Laminin G domain
    cl22861
    Location:2393 → 2486
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    cl27446
    Location:1927 → 2277
    Dynamin_M; Dynamin central region
Nucleotide Protein
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