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BTF3P12 basic transcription factor 3 pseudogene 12 [ Homo sapiens (human) ]

Gene ID: 652963, updated on 17-Sep-2024

Summary

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Official Symbol
BTF3P12provided by HGNC
Official Full Name
basic transcription factor 3 pseudogene 12provided by HGNC
Primary source
HGNC:HGNC:1127
See related
MIM:603738; AllianceGenome:HGNC:1127
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BTF3L2; HUMBTFC
Summary
This locus represents a putative member of the BTF3 family of transcription factors. With no transcription yet documented, it is thought that this locus represents a pseudogene. [provided by RefSeq]
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Genomic context

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See BTF3P12 in Genome Data Viewer
Location:
8q13.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (70273263..70274168)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (70703185..70704090)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (71185498..71186403)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5072 Neighboring gene RNA, U1 small nuclear 101, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:71017144-71017651 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:71036348-71036532 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27505 Neighboring gene H2A.Z histone pseudogene 2 Neighboring gene nuclear receptor coactivator 2 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:71060854-71061591 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27506 Neighboring gene NANOG hESC enhancer GRCh37_chr8:71144189-71144690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:71203727-71204467 Neighboring gene RNY3 pseudogene 14 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:71302664-71303031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19269 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27507 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19271 Neighboring gene ribosomal protein S18 pseudogene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic structure of the putative BTF3 transcription factor. Kanno M, et al. Gene, 1992 Aug 15. PMID 1386332

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • basic transcription factor 3, like 2
  • basic transcription factor 3, pseudogene
  • basic transcription factor 3-like 2, pseudogene
  • lambda h23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005366.5 

    Range
    101..1006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    70273263..70274168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    70703185..70704090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001209.1: Suppressed sequence

    Description
    NM_001209.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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