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LOC6505130 irregular chiasm C-roughest protein [ Drosophila ananassae ]

Gene ID: 6505130, updated on 10-May-2024

Summary

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Gene symbol
LOC6505130
Gene description
irregular chiasm C-roughest protein
Locus tag
Dana_GF22469
See related
EnsemblRapid:LOC6505130
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila ananassae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GF22469; GF22469-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6505130 in Genome Data Viewer
Location:
chromosome: XR
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1763931v2 (GCF_017639315.1) XR NC_057932.1 (17207431..17231819, complement)
101 previous assembly DanaRS2.1 (GCF_003285975.2) Unplaced Scaffold NW_022473271.1 (4977802..5001193, complement)

Chromosome XR - NC_057932.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6502746 Neighboring gene (3R)-3-hydroxyacyl-CoA dehydrogenase Neighboring gene uncharacterized LOC123257572 Neighboring gene uncharacterized protein DDB_G0282077

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
irregular chiasm C-roughest protein
Names
Dana\GF22469
Dana\GF22469-PA
dana_GLEANR_6435

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila ananassae Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1763931v2

Genomic

  1. NC_057932.1 Reference ASM1763931v2

    Range
    17207431..17231819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032452004.2 → XP_032307895.1  irregular chiasm C-roughest protein

    UniProtKB/TrEMBL
    B3MWD5
    Related
    XP_032307895.1, XM_032452004.2
    Conserved Domains (3) summary
    pfam08205
    Location:139 → 229
    C2-set_2; CD80-like C2-set immunoglobulin domain
    cd00096
    Location:139 → 142
    Ig; Ig strand A [structural motif]
    cl11960
    Location:443 → 539
    Ig; Immunoglobulin domain

  2. XM_044717271.1 → XP_044573206.1  irregular chiasm C-roughest protein

    UniProtKB/TrEMBL
    B3MWD5
    Related
    XP_044573206.1, XM_044717271.1
    Conserved Domains (3) summary
    pfam08205
    Location:139 → 229
    C2-set_2; CD80-like C2-set immunoglobulin domain
    cd00096
    Location:139 → 142
    Ig; Ig strand A [structural motif]
    cl11960
    Location:443 → 539
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

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