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LOC6497312 transcription factor hamlet [ Drosophila ananassae ]

Gene ID: 6497312, updated on 10-May-2024

Summary

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Gene symbol
LOC6497312
Gene description
transcription factor hamlet
Locus tag
Dana_GF14488
See related
EnsemblRapid:LOC6497312
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila ananassae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GF14488; GF14488-PB; GF14488-PC; GF14488-PD; GF14488-PE; GF14488-PF; GF14488-PG; GF14488-PH
Orthologs
fruit fly all
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Genomic context

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See LOC6497312 in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
10
Annotation release Status Assembly Chr Location
102 current ASM1763931v2 (GCF_017639315.1) 3R NC_057930.1 (20498560..20526455)
101 previous assembly DanaRS2.1 (GCF_003285975.2) Unplaced Scaffold NW_022473268.1 (2102056..2129960)

Chromosome 3R - NC_057930.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC26515372 Neighboring gene uncharacterized LOC6498226 Neighboring gene uncharacterized LOC123256959 Neighboring gene uncharacterized LOC6497311 Neighboring gene uncharacterized LOC6498225 Neighboring gene zinc finger protein squeeze

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor hamlet
Names
Dana\GF14488
Dana\GF14488-PB
Dana\GF14488-PC
Dana\GF14488-PD
Dana\GF14488-PE
Dana\GF14488-PF
Dana\GF14488-PG
Dana\GF14488-PH
dana_GLEANR_15250

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila ananassae Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1763931v2

Genomic

  1. NC_057930.1 Reference ASM1763931v2

    Range
    20498560..20526455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014906151.3 → XP_014761637.1  transcription factor hamlet isoform X1

    UniProtKB/TrEMBL
    A0A0P8XFD7, A0A0P8ZFC9
    Related
    XP_014761637.1, XM_014906151.3
    Conserved Domains (5) summary
    COG5048
    Location:924 → 987
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:937 → 957
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:935 → 957
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:949 → 973
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:418 → 496
    zf-C2H2_8; C2H2-type zinc ribbon

  2. XM_014906154.3 → XP_014761640.1  transcription factor hamlet isoform X3

    UniProtKB/TrEMBL
    A0A0P8XFD7, A0A0P8XVU3
    Related
    XP_014761640.1, XM_014906154.3
    Conserved Domains (7) summary
    PHA03309
    Location:676 → 714
    PHA03309; transcriptional regulator ICP4; Provisional
    COG5189
    Location:200 → 349
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:817 → 837
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19201
    Location:7 → 126
    PR-SET_ZFPM; PR-SET domain found in zinc finger protein ZFPM1, ZFPM2 and similar proteins
    pfam00096
    Location:815 → 837
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:829 → 853
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:273 → 315
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  3. XM_032451567.2 → XP_032307458.1  transcription factor hamlet isoform X3

    UniProtKB/TrEMBL
    A0A0P8XFD7, A0A0P8XVU3
    Related
    XP_032307458.1, XM_032451567.2
    Conserved Domains (7) summary
    PHA03309
    Location:676 → 714
    PHA03309; transcriptional regulator ICP4; Provisional
    COG5189
    Location:200 → 349
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:817 → 837
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19201
    Location:7 → 126
    PR-SET_ZFPM; PR-SET domain found in zinc finger protein ZFPM1, ZFPM2 and similar proteins
    pfam00096
    Location:815 → 837
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:829 → 853
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:273 → 315
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  4. XM_001962304.4 → XP_001962340.2  transcription factor hamlet isoform X2

    UniProtKB/TrEMBL
    A0A0P8XFD7, B3MKK8
    Related
    XP_001962340.2, XM_001962304.4
    Conserved Domains (5) summary
    COG5048
    Location:913 → 976
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:926 → 946
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:924 → 946
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:938 → 962
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:407 → 485
    zf-C2H2_8; C2H2-type zinc ribbon
Nucleotide Protein Strain
Heading Accession and Version

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