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RPL23AP16 ribosomal protein L23a pseudogene 16 [ Homo sapiens (human) ]

Gene ID: 647201, updated on 17-Sep-2024

Summary

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Official Symbol
RPL23AP16provided by HGNC
Official Full Name
ribosomal protein L23a pseudogene 16provided by HGNC
Primary source
HGNC:HGNC:36652
See related
Ensembl:ENSG00000228190 AllianceGenome:HGNC:36652
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL23A_4_145
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Genomic context

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See RPL23AP16 in Genome Data Viewer
Location:
1q32.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (199371856..199372290)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (198630621..198631055)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (199340984..199341418)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1222 Neighboring gene long intergenic non-protein coding RNA 1221 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2289 Neighboring gene uncharacterized LOC107985243 Neighboring gene NANOG hESC enhancer GRCh37_chr1:199085580-199086086 Neighboring gene long intergenic non-protein coding RNA 2789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:199187681-199188395 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2291 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2292 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2293 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:199241403-199242602 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 44 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:199417155-199417655 Neighboring gene uncharacterized LOC105371680

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009787.2 

    Range
    101..535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    199371856..199372290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    198630621..198631055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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