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TCP1P1 t-complex 1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 647047, updated on 17-Sep-2024

Summary

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Official Symbol
TCP1P1provided by HGNC
Official Full Name
t-complex 1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:11659
See related
AllianceGenome:HGNC:11659
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCP1L1; CCT1-3P
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Genomic context

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See TCP1P1 in Genome Data Viewer
Location:
7p14.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (42794772..42796859)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (42952950..42955037)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (42834371..42836458)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375251 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:42700646-42701845 Neighboring gene long intergenic non-protein coding RNA 1448 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:42726154-42726702 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:42789414-42790613 Neighboring gene NANOG hESC enhancer GRCh37_chr7:42845047-42845574 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18120 Neighboring gene uncharacterized LOC107986735 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:42910171-42910751 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:42915433-42916364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42917594-42918115 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42923371-42924173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:42927975-42928518 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:42950498-42951195 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:42951196-42951892 Neighboring gene chromosome 7 open reading frame 25

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human homologue of the mouse t-complex gene, TCP1, is located on chromosome 6 but is not near the HLA region. Willison K, et al. EMBO J, 1987 Jul. PMID 3653076, Free PMC Article
  2. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article
  3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • t-complex 1-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006549.2 

    Range
    68..2155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    42794772..42796859
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    42952950..42955037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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