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LOC646938 TBC1 domain family member 2B pseudogene [ Homo sapiens (human) ]

Gene ID: 646938, updated on 17-Sep-2024

Summary

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Gene symbol
LOC646938
Gene description
TBC1 domain family member 2B pseudogene
See related
Ensembl:ENSG00000290424
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC646938 in Genome Data Viewer
Location:
15q25.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (78752037..78753392)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (76615462..76616817)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (79044379..79045734)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family member D pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79027403-79027904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79031801-79032780 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79032781-79033760 Neighboring gene dynamin 1 pseudogene 37 Neighboring gene uncharacterized LOC112268143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79048664-79049468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79049469-79050273 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79059419-79059996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79061151-79061726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:79066205-79066706 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40965

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. Huttlin EL, et al. Cell, 2021 May 27. PMID 33961781, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036495.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022748
    Related
    ENST00000434914.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    78752037..78753392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    76615462..76616817
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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Research Materials