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REREP3 arginine-glutamic acid dipeptide repeats pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 646396, updated on 17-Sep-2024

Summary

Official Symbol
REREP3provided by HGNC
Official Full Name
arginine-glutamic acid dipeptide repeats pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:38797
See related
AllianceGenome:HGNC:38797
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 8.3), lymph node (RPKM 1.3) and 18 other tissues See more
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Genomic context

See REREP3 in Genome Data Viewer
Location:
15q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (22258614..22282880)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (19163980..19189137)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (22546565..22570831)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928039 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:22538563-22539064 Neighboring gene uncharacterized LOC124903445 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6256 Neighboring gene RING finger protein 145-like Neighboring gene SPATA31 subfamily E member 3, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033735.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025884

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    22258614..22282880
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    1486968..1511181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    19163980..19189137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)