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TAF11L5 TATA-box binding protein associated factor 11 like 5 [ Homo sapiens (human) ]

Gene ID: 646066, updated on 10-Oct-2023

Summary

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Official Symbol
TAF11L5provided by HGNC
Official Full Name
TATA-box binding protein associated factor 11 like 5provided by HGNC
Primary source
HGNC:HGNC:53848
See related
Ensembl:ENSG00000284234 AllianceGenome:HGNC:53848
Gene type
protein coding
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to be part of transcription factor TFIID complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See TAF11L5 in Genome Data Viewer
Location:
5p15.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (17525235..17525831)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (17468110..17468706)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (17525344..17525940)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17518421-17518925 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr5:17522147-17522814 Neighboring gene TATA-box binding protein associated factor 11 like 3 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17524947-17525610 Neighboring gene TATA-box binding protein associated factor 11 like 4 Neighboring gene TATA-box binding protein associated factor 11 like 6 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17582242-17583188 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17583189-17584134 Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17584965-17585902 Neighboring gene TATA-box binding protein associated factor 11 like 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome. Tremblay DC, et al. BMC Genomics, 2010 Nov 15. PMID 21078170, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General protein information

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Preferred Names
TATA-box binding protein associated factor 11 like 5
Names
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401699.1 → NP_001388628.1  TATA-box binding protein associated factor 11 like 5

    Status: INFERRED

    Source sequence(s)
    AC106774
    Consensus CDS
    CCDS93691.1
    UniProtKB/Swiss-Prot
    A0A1W2PP81, P0DW11, P0DW12, P0DW13, P0DW14
    Related
    ENSP00000492874.1, ENST00000638483.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    17525235..17525831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    17468110..17468706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_023221.1: Suppressed sequence

    Description
    NG_023221.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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