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TPI1 triosephosphate isomerase [ Brettanomyces bruxellensis ]

Gene ID: 64573071, updated on 30-Nov-2023

Summary

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Gene symbol
TPI1
Gene description
triosephosphate isomerase
Locus tag
BRETT_001146
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Brettanomyces bruxellensis (strain: UCD 2041, culture-collection: AWRI:2804)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Pichiaceae; Brettanomyces
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Genomic context

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See TPI1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_054689.1 (2124016..2124759)

Chromosome 8 - NC_054689.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Alanine--tRNA ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054689.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. New genome assemblies reveal patterns of domestication and adaptation across Brettanomyces (Dekkera) species. Roach MJ, et al. BMC Genomics, 2020 Mar 2. PMID 32122298, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables triose-phosphate isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in gluconeogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glyceraldehyde-3-phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerol catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycolytic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
triosephosphate isomerase
XP_041137916.1
  • BUSCO:EOG092644TW

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_054689.1 Reference assembly

    Range
    2124016..2124759
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041279702.1 → XP_041137916.1  triosephosphate isomerase [Brettanomyces bruxellensis]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A3F2Y7F9, I2JZV0
    Conserved Domains (1) summary
    cd00311
    Location:5 → 244
    TIM; Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually ...
Nucleotide Protein
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Gene LinkOut

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