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GYG1P3 glycogenin 1 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 645506, updated on 17-Sep-2024

Summary

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Official Symbol
GYG1P3provided by HGNC
Official Full Name
glycogenin 1 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:39711
See related
AllianceGenome:HGNC:39711
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See GYG1P3 in Genome Data Viewer
Location:
1p32.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (55222279..55224076)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (55103116..55104913)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (55687952..55689749)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 24 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1071 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 928 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 929 Neighboring gene uncharacterized LOC100507634 Neighboring gene MIR4422 host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:55705977-55706476 Neighboring gene microRNA 4422 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 930 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:55789428-55789960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:55800171-55800672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:55800673-55801172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1072 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:55810023-55810523 Neighboring gene GOT2 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • glycogenin 1 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021229.2 

    Range
    101..1898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    55222279..55224076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    55103116..55104913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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