LINC00693 long intergenic non-protein coding RNA 693 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LINC00693provided by HGNC
Official Full Name: long intergenic non-protein coding RNA 693provided by HGNC
Primary source: HGNC:HGNC:44526
See related: AllianceGenome:HGNC:44526
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression: Broad expression in brain (RPKM 2.4), thyroid (RPKM 1.5) and 15 other tissues See more
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Genomic context

Location:: 3p24.1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCh38.p14 (GCF_000001405.40)	3	NC_000003.12 (28575278..28758337)
RS_2024_08	current	T2T-CHM13v2.0 (GCF_009914755.1)	3	NC_060927.1 (28577168..28760449)
RS_2024_09	previous assembly	GRCh37.p13 (GCF_000001405.25)	3	NC_000003.11 (28616769..28799828)

Chromosome 3 - NC_000003.12 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Dissection of the genetics of Parkinson's disease identifies an additional association 5' of SNCA and multiple associated haplotypes at 17q21. EBI GWAS Catalog EBI GWAS CatalogPubMed
Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

SHGC-76787 (e-PCR)
- UniSTS:47625

D3S1283 (e-PCR)
- UniSTS:52753

D3S1283 (e-PCR)
- UniSTS:8756

RH120456 (e-PCR)
- UniSTS:133451

RH45316 (e-PCR)
- UniSTS:54635

WI-22619 (e-PCR)
- UniSTS:54636

RH65615 (e-PCR)
- UniSTS:7563

D3S4535 (e-PCR)
- UniSTS:78496

G59854 (e-PCR)
- UniSTS:137139

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.