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LOC645163 phosphatidylinositol 4-kinase type 2 alpha pseudogene [ Homo sapiens (human) ]

Gene ID: 645163, updated on 17-Jun-2024

Summary

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Gene symbol
LOC645163
Gene description
phosphatidylinositol 4-kinase type 2 alpha pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC645163 in Genome Data Viewer
Location:
17q22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (53434545..53437359)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (54309719..54312533)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (51511906..51514720)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:51123434-51123934 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:51138562-51139451 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:51219872-51220372 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr17:51220373-51220873 Neighboring gene MT-CO1 pseudogene 40 Neighboring gene tubulin beta 6 class V pseudogene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:51532575-51533558 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr17:51693716-51694915 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:51707755-51708255 Neighboring gene MPRA-validated peak2897 silencer Neighboring gene uncharacterized LOC107984982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022471.2 

    Range
    101..2915
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    53434545..53437359
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    54309719..54312533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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