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COL25A1-DT COL25A1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 645078, updated on 5-Mar-2024

Summary

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Official Symbol
COL25A1-DTprovided by HGNC
Official Full Name
COL25A1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:32963
See related
Ensembl:ENSG00000246774 AllianceGenome:HGNC:32963
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZCCHC23
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
4q25
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (109303035..109316135)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (112605155..112618255)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (110224191..110237291)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene collagen type XXV alpha 1 chain Neighboring gene uncharacterized LOC124900756 Neighboring gene Sharpr-MPRA regulatory region 6815 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71618 Neighboring gene Sharpr-MPRA regulatory region 12117 Neighboring gene uncharacterized LOC124900754 Neighboring gene NANOG hESC enhancer GRCh37_chr4:110107576-110108103 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71641 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71659 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71681 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71700 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15620 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110223886-110224668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:110314172-110314672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:110314673-110315173 Neighboring gene RBMX pseudogene 4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:110340209-110340746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:110354865-110355724 Neighboring gene SEC24B antisense RNA 1 Neighboring gene SEC24 homolog B, COPII coat complex component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Other Names

  • zinc finger CCHC domain-containing protein 23
  • zinc finger CCHC-type containing 23

Clone Names

  • FLJ45231, AC004051.2

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_160939.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004051
    Related
    ENST00000500526.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    109303035..109316135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    112605155..112618255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039778.2: Suppressed sequence

    Description
    NM_001039778.2: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZST2.1 GenPept UniProtKB/Swiss-Prot:Q6ZST2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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Research Materials
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