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rps4 ribosomal protein S4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 6450179, updated on 12-Jul-2024

Summary

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Gene symbol
rps4
Gene description
ribosomal protein S4
Locus tag
OrsajM_p32
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Oryza sativa Japonica Group (cultivar: Nipponbare)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Genomic context

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See rps4 in Genome Data Viewer
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) MT (non-nuclear) NC_011033.1 (248580..249638, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) MT (non-nuclear) NC_011033.1 (248580..249638, complement)

Chromosome MT - NC_011033.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene NADH dehydrogenase subunit 1 Neighboring gene ribosomal protein S13 Neighboring gene ribosomal protein S11 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Notsu Y, et al. Mol Genet Genomics, 2002 Dec. PMID 12471441

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Miscellaneous features

  • Loc: c248612 C to U RNA editing
  • Loc: c248617 C to U RNA editing
  • Loc: c248626 C to U RNA editing
  • Loc: c248677 C to U RNA editing
  • Loc: c248702 C to U RNA editing
  • Loc: c248713 C to U RNA editing
  • Loc: c248733 C to U RNA editing
  • Loc: c248772 C to U RNA editing
  • Loc: c249157 C to U RNA editing
  • Loc: c249304 C to U RNA editing
  • Loc: c249349 C to U RNA editing
  • Loc: c249361 C to U RNA editing
  • Loc: c249475 C to U RNA editing
  • Loc: c249590 C to U RNA editing
  • Loc: c249601 C to U RNA editing

General protein information

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Names
ribosomal protein S4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011033.1 Reference assembly

    Range
    248580..249638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002000578.1 ribosomal protein S4 [Oryza sativa Japonica Group]

    See identical proteins and their annotated locations for YP_002000578.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q8HCN9
    Conserved Domains (2) summary
    TIGR01017
    Location:5 → 147
    rpsD_bact; ribosomal protein S4, bacterial/organelle type
    pfam01479
    Location:92 → 138
    S4; S4 domain
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
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Research Materials