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BEND3P1 BEN domain containing 3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 644459, updated on 17-Sep-2024

Summary

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Official Symbol
BEND3P1provided by HGNC
Official Full Name
BEN domain containing 3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:45014
See related
AllianceGenome:HGNC:45014
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See BEND3P1 in Genome Data Viewer
Location:
10q11.23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (50658103..50663946)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (51506712..51512556)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (52417863..52423706)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene sphingomyelin synthase 1 Neighboring gene RNA, U7 small nuclear 107 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2368 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3366 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2369 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:52383585-52384113 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3367 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3368 Neighboring gene SGMS1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3369 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3370 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3373 Neighboring gene SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1 Neighboring gene uncharacterized LOC105378302 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:52439265-52439764 Neighboring gene NUT family member 2H, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Clone Names

  • KIAA1553

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011921.1 

    Range
    101..5944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    50658103..50663946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    51506712..51512556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials