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LINC00622 long intergenic non-protein coding RNA 622 [ Homo sapiens (human) ]

Gene ID: 644242, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00622provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 622provided by HGNC
Primary source
HGNC:HGNC:44251
See related
Ensembl:ENSG00000260941 AllianceGenome:HGNC:44251
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
1p12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (119597702..119599291, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (119610905..119612494, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (120140325..120141914, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 33 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:120147336-120148535 Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5 Neighboring gene MPRA-validated peak396 silencer Neighboring gene zinc finger protein 697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1244 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1246 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:120190306-120190469 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1247 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:120190885-120191725

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • FLJ41173

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036540.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI791995, AK123168, BC015390, BQ433915
    Related
    ENST00000562811.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    119597702..119599291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    119610905..119612494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases