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SPDYE9 speedy/RINGO cell cycle regulator family member E9 [ Homo sapiens (human) ]

Gene ID: 643909, updated on 10-Oct-2023

Summary

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Official Symbol
SPDYE9provided by HGNC
Official Full Name
speedy/RINGO cell cycle regulator family member E9provided by HGNC
Primary source
HGNC:HGNC:45034
See related
Ensembl:ENSG00000262461 AllianceGenome:HGNC:45034
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SPDYE9P
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Genomic context

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See SPDYE9 in Genome Data Viewer
Location:
7q11.23
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (73075972..73086038, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (74276032..74286089, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 (PATCHES) NW_003871064.1 (605208..615274, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 8 Neighboring gene speedy/RINGO cell cycle regulator family member E11 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 14 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 6 Neighboring gene speedy/RINGO cell cycle regulator family member E10 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:72568113-72568885 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18244 Neighboring gene general transcription factor IIi pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits. Kim YJ, et al. Nat Genet, 2011 Sep 11. PMID 21909109
  2. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Large-scale genome-wide association studies in East Asians identify new genetic loci influencing metabolic traits.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

Clone Names

  • FLJ20949

General protein information

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Preferred Names
speedy/RINGO cell cycle regulator family member E9
Names
Williams Beuren syndrome chromosome region 19 pseudogene
speedy homolog E1 pseudogene
speedy homolog E9, pseudogene
speedy/RINGO cell cycle regulator family member E1 pseudogene
speedy/RINGO cell cycle regulator family member E9, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382554.3 → NP_001369483.1  speedy/RINGO cell cycle regulator family member E9

    Status: VALIDATED

    Source sequence(s)
    AC211476
    Consensus CDS
    CCDS94116.1
    UniProtKB/Swiss-Prot
    A0A494C191, P0DTA3, P0DUD1, P0DUD2, P0DUX0
    Related
    ENSP00000498945.1, ENST00000575125.6
    Conserved Domains (1) summary
    pfam11357
    Location:107 → 261
    Spy1; Cell cycle regulatory protein

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    73075972..73086038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047420708.1 → XP_047276664.1  speedy/RINGO cell cycle regulator family member E9 isoform X1

    UniProtKB/Swiss-Prot
    A0A494C191, P0DTA3, P0DUD1, P0DUD2, P0DUX0

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    74276032..74286089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054358794.1 → XP_054214769.1  speedy/RINGO cell cycle regulator family member E9 isoform X1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006528.3: Suppressed sequence

    Description
    NG_006528.3: This RefSeq was permanently suppressed because the gene is no longer present as a unique locus in the GRCh38 assembly.

  2. NG_006532.5: Suppressed sequence

    Description
    NG_006532.5: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version

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