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CNTNAP3P2 CNTNAP3 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 643827, updated on 17-Sep-2024

Summary

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Official Symbol
CNTNAP3P2provided by HGNC
Official Full Name
CNTNAP3 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:49589
See related
AllianceGenome:HGNC:49589
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in esophagus (RPKM 4.5), skin (RPKM 3.4) and 22 other tissues See more
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Genomic context

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See CNTNAP3P2 in Genome Data Viewer
Location:
9q21.11
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (67059460..67297156)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (78831566..79069504)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (65576955..65665655)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene SPATA31 subfamily A member 3 Neighboring gene uncharacterized LOC105379450 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:40673375-40673944 Neighboring gene USP12 pseudogene 3 Neighboring gene NSA2 ribosome biogenesis homolog (S. cerevisiae) pseudogene Neighboring gene RNA, 7SL, cytoplasmic 422, pseudogene Neighboring gene RNA binding motif protein 17 pseudogene 2 Neighboring gene vomeronasal 2 receptor 7 pseudogene Neighboring gene uncharacterized LOC101927602

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CASPR3 pseudogene
  • contactin associated protein-like 3 pseudogene 2

Clone Names

  • FLJ14195, FLJ30083

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111893.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL162233, BX005195

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    67059460..67297156
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    78831566..79069504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_012895.1: Suppressed sequence

    Description
    NG_012895.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed

  2. NG_027506.1: Suppressed sequence

    Description
    NG_027506.1: This RefSeq was permanently suppressed because it is now thought that this gene is transcribed.

  3. NM_001012280.1: Suppressed sequence

    Description
    NM_001012280.1: This RefSeq was permanently suppressed because the locus is now thought to be a pseudogene.
Nucleotide Protein
Heading Accession and Version

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