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BTF3P16 basic transcription factor 3 pseudogene 16 [ Homo sapiens (human) ]

Gene ID: 643412, updated on 17-Sep-2024

Summary

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Official Symbol
BTF3P16provided by HGNC
Official Full Name
basic transcription factor 3 pseudogene 16provided by HGNC
Primary source
HGNC:HGNC:38568
See related
AllianceGenome:HGNC:38568
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See BTF3P16 in Genome Data Viewer
Location:
3q12.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (101456985..101457846, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (104163697..104164558, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (101175829..101176690, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene SUMO specific peptidase 7 Neighboring gene zinc finger protein 90 pseudogene 1 Neighboring gene family with sequence similarity 136 member A pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:101185392-101185939 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:101185940-101186486 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:101203214-101204413 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20164 Neighboring gene ARB2 family member B, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005360.6 

    Range
    101..962
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    101456985..101457846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    104163697..104164558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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