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CCT6P1 chaperonin containing TCP1 subunit 6 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 643253, updated on 10-Oct-2023

Summary

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Official Symbol
CCT6P1provided by HGNC
Official Full Name
chaperonin containing TCP1 subunit 6 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:33094
See related
Ensembl:ENSG00000291124 AllianceGenome:HGNC:33094
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCT6-5P; CCT6AP1
Expression
Ubiquitous expression in testis (RPKM 7.0), bone marrow (RPKM 6.7) and 25 other tissues See more
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Genomic context

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Location:
7q11.21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (65751105..65763675)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (66973233..66985797)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (65216092..65228662)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene glutamate metabotropic receptor 8 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr7:65103805-65104363 Neighboring gene long intergenic non-protein coding RNA 3006 Neighboring gene integrator complex subunit 4 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 6763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26074 Neighboring gene small nucleolar RNA, H/ACA box 15B-2 Neighboring gene small nucleolar RNA, H/ACA box 22 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65234206-65234829 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:65234830-65235452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65240377-65240878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:65240879-65241378 Neighboring gene general transcription factor IIi pseudogene 5 Neighboring gene RNA, U6 small nuclear 912, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An integrated workflow for charting the human interaction proteome: insights into the PP2A system. Glatter T, et al. Mol Syst Biol, 2009. PMID 19156129, Free PMC Article
  2. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. Mukherjee K, et al. BMC Evol Biol, 2010 Mar 1. PMID 20193073, Free PMC Article
  3. Toward a complete human genome sequence. Sanger Center, et al. Genome Res, 1998 Nov. PMID 9847074
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1
  • chaperonin containing TCP1, subunit 6A (zeta 1) pseudogene 1
  • chaperonin containing TCP1, subunit 6A pseudogene

Clone Names

  • DKFZp779B0634

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003110.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    BC052238
    Related
    ENST00000686689.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    65751105..65763675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    66973233..66985797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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