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SETP4 SET pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 642869, updated on 10-Oct-2023

Summary

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Official Symbol
SETP4provided by HGNC
Official Full Name
SET pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:42923
See related
AllianceGenome:HGNC:42923
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SETP4 in Genome Data Viewer
Location:
Xq21.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (84755069..84756677)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (83183671..83185279)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (84010077..84011685)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene microRNA 548i-4 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:83643706-83644905 Neighboring gene highly divergent homeobox Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20911 Neighboring gene NANOG hESC enhancer GRCh37_chrX:83968054-83968555 Neighboring gene testis expressed 16, pseudogene Neighboring gene ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) Neighboring gene apolipoprotein O like Neighboring gene spermidine/spermine N1-acetyl transferase like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • SET translocation (myeloid leukemia-associated) pseudogene
  • hCG1644608

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_017144.2 

    Range
    101..1709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    84755069..84756677
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    83183671..83185279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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