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TBC1D22A-AS1 TBC1D22A antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 642757, updated on 10-Oct-2023

Summary

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Official Symbol
TBC1D22A-AS1provided by HGNC
Official Full Name
TBC1D22A antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51221
See related
Ensembl:ENSG00000280080 AllianceGenome:HGNC:51221
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See TBC1D22A-AS1 in Genome Data Viewer
Location:
22q13.31
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (46914092..46916042, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (47403341..47405291, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (47309988..47311938, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47131961-47132534 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13916 Neighboring gene ceramide kinase Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47134630-47135288 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:47150047-47150223 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:47157594-47158428 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19251 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13917 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19252 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19253 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19254 Neighboring gene TBC1D22A divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19255 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47164922-47165802 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47165803-47166681 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47169536-47170051 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47169021-47169535 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19258 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19259 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:47179260-47179426 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19260 Neighboring gene TBC1 domain family member 22A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19261 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47194214-47194714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19264 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47210780-47211732 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:47223143-47223301 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47298559-47299204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47305099-47305992 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47304205-47305098 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:47310467-47310968 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:47310969-47311468 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19265 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19266 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:47330185-47331384 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47331751-47332316 Neighboring gene uncharacterized LOC105369161 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47345253-47345850 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47345851-47346446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47361678-47362356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47378875-47379375 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47389156-47389984 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47395371-47395872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47395873-47396372 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19267 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47411357-47411986 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47411987-47412614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47424077-47424843 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47426380-47426908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47426909-47427436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47427933-47428524 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47441137-47441652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47442170-47442685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47447799-47448784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:47448785-47449768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:47451683-47452225 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19268 Neighboring gene uncharacterized LOC124905141

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome annotation-driven approach to cloning the human ORFeome. Collins JE, et al. Genome Biol, 2004. PMID 15461802, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122047.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC041833
    Related
    ENST00000640274.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    46914092..46916042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    47403341..47405291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96M85.1 GenPept UniProtKB/Swiss-Prot:Q96M85

Gene LinkOut

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Chemical Information
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Research Materials