U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HNRNPA1L3 heterogeneous nuclear ribonucleoprotein A1 like 3 [ Homo sapiens (human) ]

Gene ID: 642659, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
HNRNPA1L3provided by HGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein A1 like 3provided by HGNC
Primary source
HGNC:HGNC:48778
See related
Ensembl:ENSG00000224578 AllianceGenome:HGNC:48778
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HNRNPA1P48
Summary
Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
16q12.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (51645757..51647079)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (57443605..57444927)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (51679668..51680990)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723323 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:51426797-51427996 Neighboring gene VISTA enhancer hs848 Neighboring gene VISTA enhancer hs74 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:51573189-51573803 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:51573804-51574417 Neighboring gene VISTA enhancer hs73 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:51611051-51612250 Neighboring gene uncharacterized LOC107984892 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:51654939-51656138 Neighboring gene VISTA enhancer hs72 Neighboring gene VISTA enhancer hs71 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:51685231-51685835 Neighboring gene RN7SK pseudogene 142 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:51738563-51738778 Neighboring gene uncharacterized LOC105371257 Neighboring gene long intergenic non-protein coding RNA 1571

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. cDNA cloning of human hnRNP protein A1 reveals the existence of multiple mRNA isoforms. Buvoli M, et al. Nucleic Acids Res, 1988 May 11. PMID 2836799, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
heterogeneous nuclear ribonucleoprotein A1-like 3
Names
heterogeneous nuclear ribonucleoprotein A1 pseudogene 48

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396241.1 → NP_001383170.1  heterogeneous nuclear ribonucleoprotein A1-like 3

    Status: VALIDATED

    Source sequence(s)
    AC084058
    Consensus CDS
    CCDS92159.1
    UniProtKB/Swiss-Prot
    A0A2R8Y4L2
    UniProtKB/TrEMBL
    Q6IPF2
    Related
    ENSP00000513590.2, ENST00000698152.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    51645757..51647079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    57443605..57444927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005530.4: Suppressed sequence

    Description
    NG_005530.4: This RefSeq was removed because it is now thought that this gene is a coding retrogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A2R8Y4L2.2 GenPept UniProtKB/Swiss-Prot:A0A2R8Y4L2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials