U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

NCOA4P4 nuclear receptor coactivator 4 pseudogene 4 [ Homo sapiens (human) ]

Gene ID: 642262, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
NCOA4P4provided by HGNC
Official Full Name
nuclear receptor coactivator 4 pseudogene 4provided by HGNC
Primary source
HGNC:HGNC:52405
See related
AllianceGenome:HGNC:52405
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
5q31.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (139493841..139497974)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (140018916..140023049)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (138873426..138877559)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 11914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23234 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23235 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23236 Neighboring gene cancer-related nucleoside-triphosphatase-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:138864368-138864868 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:138865995-138866495 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23237 Neighboring gene stimulator of interferon response cGAMP interactor 1 Neighboring gene uncharacterized LOC124901083 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:138903317-138903864 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:138903865-138904410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23238 Neighboring gene ubiquitin conjugating enzyme E2 D2 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:138920017-138920213 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:138922617-138923178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:138928627-138929128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23239 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16415 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23241 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23243 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:138947583-138948084 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23244 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23245 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:138982696-138983196 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:138983197-138983697 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 15

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. Graubert TA, et al. PLoS One, 2009. PMID 19240791, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association. (HuGE Navigator)
    Title: Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_009767.1 

    Range
    101..4234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    139493841..139497974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159996.1 Reference GRCh38.p14 PATCHES

    Range
    83636..87769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    140018916..140023049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials