U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

wdr27 WD repeat domain 27 [ Danio rerio (zebrafish) ]

Gene ID: 641503, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
wdr27provided by ZNC
Official Full Name
WD repeat domain 27provided by ZNC
Primary source
ZFIN:ZDB-GENE-051120-93
See related
Ensembl:ENSDARG00000053386 AllianceGenome:ZFIN:ZDB-GENE-051120-93
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:123251; si:dkey-273e13.4
Summary
Located in cytoplasm and nucleus. Orthologous to human WDR27 (WD repeat domain 27). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See wdr27 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (35528602..35611775)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (35402775..35484277)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene steroid-5-alpha-reductase, alpha polypeptide 2b Neighboring gene mediator of cell motility 1 Neighboring gene thrombospondin 2a Neighboring gene proteasome activator subunit 4a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Choksi SP, et al. Development, 2014 Sep. PMID 25139857, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC123251

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
WD repeat-containing protein 27

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    35528602..35611775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307487.4 → XP_009305762.1  WD repeat-containing protein 27 isoform X1

    UniProtKB/TrEMBL
    A0A8M3B874, B8JJR1
    Related
    ENSDARP00000099173.4, ENSDART00000112947.5
    Conserved Domains (3) summary
    COG2319
    Location:532 → 810
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:503 → 538
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:502 → 809
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_068213080.1 → XP_068069181.1  WD repeat-containing protein 27 isoform X2

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001037440.1: Suppressed sequence

    Description
    NM_001037440.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: WDR27 (GeneID:253769).
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.