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FAM204A family with sequence similarity 204 member A [ Homo sapiens (human) ]

Gene ID: 63877, updated on 10-Oct-2024

Summary

Official Symbol
FAM204Aprovided by HGNC
Official Full Name
family with sequence similarity 204 member Aprovided by HGNC
Primary source
HGNC:HGNC:25794
See related
Ensembl:ENSG00000165669 AllianceGenome:HGNC:25794
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf84; bA319I23.1
Expression
Ubiquitous expression in testis (RPKM 6.9), brain (RPKM 5.1) and 25 other tissues See more
Orthologs
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Genomic context

See FAM204A in Genome Data Viewer
Location:
10q26.11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (118297925..118342324, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (119192932..119237311, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (120057437..120101836, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene RAB11 family interacting protein 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2863 Neighboring gene cancer susceptibility 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:119907111-119907355 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:119963650-119964234 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:119964235-119964819 Neighboring gene Sharpr-MPRA regulatory region 3281 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:119973305-119974504 Neighboring gene long intergenic non-protein coding RNA 2944 Neighboring gene NANOG hESC enhancer GRCh37_chr10:120025545-120026208 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120044911-120045412 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120045413-120045912 Neighboring gene VISTA enhancer hs672 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:120101641-120102140 Neighboring gene long intergenic non-protein coding RNA 867 Neighboring gene Sharpr-MPRA regulatory region 4791 Neighboring gene uncharacterized LOC105378507

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134672.2NP_001128144.1  protein FAM204A

    See identical proteins and their annotated locations for NP_001128144.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR when compared to variant 1.
    Source sequence(s)
    AL365498, BC023577, BM837313, DA168924
    Consensus CDS
    CCDS7605.1
    UniProtKB/Swiss-Prot
    D3DRC6, Q5T373, Q9H5V5, Q9H8W3
    UniProtKB/TrEMBL
    Q6IA51
    Related
    ENSP00000358170.4, ENST00000369172.8
  2. NM_022063.3NP_071346.1  protein FAM204A

    See identical proteins and their annotated locations for NP_071346.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL365498, BC023577, DA168924
    Consensus CDS
    CCDS7605.1
    UniProtKB/Swiss-Prot
    D3DRC6, Q5T373, Q9H5V5, Q9H8W3
    UniProtKB/TrEMBL
    Q6IA51
    Related
    ENSP00000358183.4, ENST00000369183.9

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    118297925..118342324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005270024.2XP_005270081.1  protein FAM204A isoform X2

    See identical proteins and their annotated locations for XP_005270081.1

    UniProtKB/TrEMBL
    Q6IA51
  2. XM_047425619.1XP_047281575.1  protein FAM204A isoform X3

    UniProtKB/Swiss-Prot
    D3DRC6, Q5T373, Q9H5V5, Q9H8W3
  3. XM_047425618.1XP_047281574.1  protein FAM204A isoform X1

    UniProtKB/TrEMBL
    F2Z2Y3
    Related
    ENSP00000432701.1, ENST00000470476.5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    119192932..119237311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054366526.1XP_054222501.1  protein FAM204A isoform X2

  2. XM_054366527.1XP_054222502.1  protein FAM204A isoform X3

    UniProtKB/Swiss-Prot
    D3DRC6, Q5T373, Q9H5V5, Q9H8W3
  3. XM_054366525.1XP_054222500.1  protein FAM204A isoform X1

    UniProtKB/TrEMBL
    F2Z2Y3