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PtrM4_036160 NUC153 multi-domain protein [ Pyrenophora tritici-repentis ]

Gene ID: 6347411, updated on 10-Jul-2024

Summary

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Gene symbol
PtrM4_036160
Gene description
NUC153 multi-domain protein
Locus tag
PtrM4_036160
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pyrenophora tritici-repentis (strain: M4, nat-host: Triticum aestivum)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Pyrenophora
Old locus tag
PTRG_09123
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Genomic context

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See PtrM4_036160 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_089390.1 (9355579..9357738)

Chromosome 1 - NC_089390.1Genomic Context describing neighboring genes Neighboring gene Periplasmic protein TonB Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089390.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity. Moolhuijzen P, et al. BMC Genomics, 2018 Apr 23. PMID 29685100, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NUC153 multi-domain protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_089390.1 Reference assembly

    Range
    9355579..9357738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001939420.1 → XP_001939455.1  NUC153 multi-domain protein [Pyrenophora tritici-repentis]

    See identical proteins and their annotated locations for XP_001939455.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W1FV56, B2WGR7
    Conserved Domains (1) summary
    COG5638
    Location:13 → 699
    COG5638; Uncharacterized conserved protein [Function unknown]
Nucleotide Protein
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Research Materials