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PtrM4_061920 RPL15A, Ribosomal protein L15E [ Pyrenophora tritici-repentis ]

Gene ID: 6340850, updated on 10-Oct-2024

Summary

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Gene symbol
PtrM4_061920
Gene description
RPL15A, Ribosomal protein L15E
Locus tag
PtrM4_061920
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pyrenophora tritici-repentis (strain: M4, nat-host: Triticum aestivum)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Dothideomycetes; Pleosporomycetidae; Pleosporales; Pleosporineae; Pleosporaceae; Pyrenophora
Old locus tag
PTRG_02628
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Genomic context

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See PtrM4_061920 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_089391.1 (1907619..1908507, complement)

Chromosome 2 - NC_089391.1Genomic Context describing neighboring genes Neighboring gene TT-ORF1 domain containing protein Neighboring gene DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain protein Neighboring gene hypothetical protein Neighboring gene PSP1 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089391.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity. Moolhuijzen P, et al. BMC Genomics, 2018 Apr 23. PMID 29685100, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RPL15A, Ribosomal protein L15E

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_089391.1 Reference assembly

    Range
    1907619..1908507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066105569.1 → XP_065964196.1  RPL15A, Ribosomal protein L15E [Pyrenophora tritici-repentis]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2W1F281
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials