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Fam90a1b family with sequence similarity 90, member A1B [ Mus musculus (house mouse) ]

Gene ID: 631145, updated on 2-Nov-2024

Summary

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Official Symbol
Fam90a1bprovided by MGI
Official Full Name
family with sequence similarity 90, member A1Bprovided by MGI
Primary source
MGI:MGI:1921682
See related
Ensembl:ENSMUSG00000043549 Ensembl:ENSMUSG00000118554 AllianceGenome:MGI:1921682
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CXorf58; 4932442L08Rik
Summary
Orthologous to several human genes including FAM90A1 (family with sequence similarity 90 member A1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in placenta adult (RPKM 1.5), testis adult (RPKM 0.3) and 1 other tissue See more
Orthologs
human all
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Genomic context

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See Fam90a1b in Genome Data Viewer
Location:
X C3; X 41.56 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (93383509..93410513, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (94339903..94366909, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 14826 Neighboring gene cell division cycle associated 5 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E11051 Neighboring gene apolipoprotein O Neighboring gene M phase phosphoprotein 6 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Placental PPARγ regulates spatiotemporally diverse genes and a unique metabolic network. Shalom-Barak T, et al. Dev Biol, 2012 Dec 1. PMID 22967998, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC141327

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein CXorf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362881.1 → NP_001349810.1  uncharacterized protein CXorf58 homolog

    Status: VALIDATED

    Source sequence(s)
    AL627302, AL646049
    Consensus CDS
    CCDS90736.1
    UniProtKB/Swiss-Prot
    A0A5F8MPE6
    Related
    ENSMUSP00000158935.2, ENSMUST00000239046.2
    Conserved Domains (1) summary
    cd21090
    Location:39 → 118
    C11orf65; chromosome 11 open reading frame 65 and homologs

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    93383509..93410513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030251470.2 → XP_030107330.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  2. XM_030251467.2 → XP_030107327.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  3. XM_030251469.2 → XP_030107329.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  4. XM_030251464.2 → XP_030107324.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  5. XM_030251465.2 → XP_030107325.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Related
    ENSMUSP00000043958.6, ENSMUST00000044989.12
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  6. XM_030251471.2 → XP_030107331.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Related
    ENSMUSP00000109536.2, ENSMUST00000113903.8
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  7. XM_030251472.1 → XP_030107332.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  8. XM_030251468.1 → XP_030107328.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle

  9. XM_030251466.1 → XP_030107326.1  uncharacterized protein CXorf58 homolog isoform X1

    UniProtKB/TrEMBL
    Q1RLL7, Q9D4F3
    Conserved Domains (1) summary
    pfam15288
    Location:33 → 68
    zf-CCHC_6; Zinc knuckle
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A5F8MPE6.1 GenPept UniProtKB/Swiss-Prot:A0A5F8MPE6

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