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Gm20758 predicted gene, 20758 [ Mus musculus (house mouse) ]

Gene ID: 629206, updated on 17-Aug-2024

Summary

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Official Symbol
Gm20758provided by MGI
Official Full Name
predicted gene, 20758provided by MGI
Primary source
MGI:MGI:5434114
See related
Ensembl:ENSMUSG00000112533 AllianceGenome:MGI:5434114
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Gm20758 in Genome Data Viewer
Location:
10; 10 D1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (111690426..111710281, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (111854521..111874376, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27887 Neighboring gene predicted gene, 46193 Neighboring gene S-adenosylmethionine decarboxylase, pseudogene 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_27889 Neighboring gene STARR-seq mESC enhancer starr_27890 Neighboring gene STARR-seq mESC enhancer starr_27891 Neighboring gene STARR-seq mESC enhancer starr_27892 Neighboring gene STARR-seq mESC enhancer starr_27894 Neighboring gene STARR-positive B cell enhancer mm9_chr10:111362554-111362854 Neighboring gene STARR-positive B cell enhancer ABC_E5182 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:111409583-111409851 Neighboring gene STARR-seq mESC enhancer starr_27895 Neighboring gene STARR-positive B cell enhancer ABC_E2340 Neighboring gene STARR-positive B cell enhancer ABC_E1813 Neighboring gene STARR-positive B cell enhancer ABC_E3914 Neighboring gene KRR1, small subunit (SSU) processome component, homolog (yeast) Neighboring gene GLI pathogenesis related 1 Neighboring gene calcyphosphine 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046029.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC069074
    Related
    ENSMUST00000220339.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    111690426..111710281 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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