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Hmgb1-rs17 high mobility group box 1, related sequence 17 [ Mus musculus (house mouse) ]

Gene ID: 628431, updated on 17-Aug-2024

Summary

Official Symbol
Hmgb1-rs17provided by MGI
Official Full Name
high mobility group box 1, related sequence 17provided by MGI
Primary source
MGI:MGI:104764
See related
AllianceGenome:MGI:104764
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hmg1-rs17
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Genomic context

See Hmgb1-rs17 in Genome Data Viewer
Location:
8 A4; 8 20.5 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (33974339..33975785)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (33484311..33485757)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene purine-rich element binding protein G Neighboring gene STARR-seq mESC enhancer starr_21104 Neighboring gene STARR-seq mESC enhancer starr_21105 Neighboring gene translocase of outer mitochondrial membrane 40 homolog pseudogene Neighboring gene STARR-seq mESC enhancer starr_21108 Neighboring gene testis expressed gene 15 meiosis and synapsis associated Neighboring gene STARR-seq mESC enhancer starr_21109 Neighboring gene protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform Neighboring gene UBX domain protein 8

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033589.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC117807

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    33974339..33975785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_001393.3: Suppressed sequence

    Description
    NG_001393.3: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.