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Gm6647 predicted gene 6647 [ Mus musculus (house mouse) ]

Gene ID: 626053, updated on 22-Oct-2024

Summary

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Official Symbol
Gm6647provided by MGI
Official Full Name
predicted gene 6647provided by MGI
Primary source
MGI:MGI:3647714
See related
Ensembl:ENSMUSG00000125246 AllianceGenome:MGI:3647714
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG626053
Expression
Restricted expression toward testis adult (RPKM 6.1) See more
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Genomic context

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See Gm6647 in Genome Data Viewer
Location:
5 A1; 5 5.2 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (13817258..13822081)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (13767244..13772067)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A Neighboring gene predicted gene, 52804 Neighboring gene STARR-seq mESC enhancer starr_12452 Neighboring gene STARR-seq mESC enhancer starr_12453 Neighboring gene STARR-seq mESC enhancer starr_12455 Neighboring gene STARR-seq mESC enhancer starr_12456 Neighboring gene RIKEN cDNA 4930568A13 gene Neighboring gene anaphase-promoting complex subunit 5 pseudogene Neighboring gene spermatogenesis associated glutamate (E)-rich protein 3 Neighboring gene predicted gene 6650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC626053

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378265.1 → NP_001365194.1  uncharacterized protein LOC626053

    Status: VALIDATED

    Source sequence(s)
    AC102477
    Related
    ENSMUST00000269087.1
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 134
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    13817258..13822081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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