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Tmem236 transmembrane protein 236 [ Mus musculus (house mouse) ]

Gene ID: 625286, updated on 11-Nov-2024

Summary

Official Symbol
Tmem236provided by MGI
Official Full Name
transmembrane protein 236provided by MGI
Primary source
MGI:MGI:1919309
See related
Ensembl:ENSMUSG00000061531 AllianceGenome:MGI:1919309
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm613; Fam23a; 2010003H20Rik
Summary
Predicted to be located in membrane. Orthologous to human TMEM236 (transmembrane protein 236). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in large intestine adult (RPKM 21.7), small intestine adult (RPKM 10.6) and 2 other tissues See more
Orthologs
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Genomic context

See Tmem236 in Genome Data Viewer
Location:
2 A2; 2 10.42 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (14179335..14226804)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (14174524..14221993)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_03722 Neighboring gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand Neighboring gene signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 Neighboring gene STARR-seq mESC enhancer starr_03726 Neighboring gene STARR-positive B cell enhancer ABC_E5890 Neighboring gene mannose receptor, C type 1 Neighboring gene STARR-seq mESC enhancer starr_03727 Neighboring gene STARR-seq mESC enhancer starr_03728 Neighboring gene microRNA 511 Neighboring gene STARR-seq mESC enhancer starr_03729 Neighboring gene solute carrier family 39 (zinc transporter), member 12 Neighboring gene STARR-seq mESC enhancer starr_03730

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein 236
Names
family with sequence similarity 23, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081310.2NP_001074779.1  transmembrane protein 236

    See identical proteins and their annotated locations for NP_001074779.1

    Status: PROVISIONAL

    Source sequence(s)
    AK008065, AL845434, BY733764
    Consensus CDS
    CCDS38049.1
    UniProtKB/Swiss-Prot
    A2ARJ3
    Related
    ENSMUSP00000076722.8, ENSMUST00000077517.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    14179335..14226804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238983.3XP_011237285.1  transmembrane protein 236 isoform X1