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Calcium-dependent lipid-binding (CaLB domain) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 6240657, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-dependent lipid-binding (CaLB domain) family protein
Primary source
TAIR:AT4G00467
Locus tag
AT4G00467
See related
Araport:AT4G00467
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (214768..216076, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene RNA polymerase II transcription mediator Neighboring gene RHO guanyl-nucleotide exchange factor 3 Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene beta-amylase 2 Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calcium-dependent lipid-binding (CaLB domain) family protein
NP_001118904.1
  • Calcium-dependent lipid-binding (CaLB domain) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G63220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    214768..216076 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340254.1 → NP_001328185.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3W1, A0A654FKV1

  2. NM_001125432.1 → NP_001118904.1  Calcium-dependent lipid-binding (CaLB domain) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118904.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FKV1, B3H4G1
    Conserved Domains (1) summary
    cd04049
    Location:4 → 127
    C2_putative_Elicitor-responsive_gene; C2 domain present in the putative elicitor-responsive gene
Nucleotide Protein
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