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Msantd5 Myb/SANT DNA binding domain containing 5 [ Mus musculus (house mouse) ]

Gene ID: 622699, updated on 2-Nov-2024

Summary

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Official Symbol
Msantd5provided by MGI
Official Full Name
Myb/SANT DNA binding domain containing 5provided by MGI
Primary source
MGI:MGI:3650740
See related
Ensembl:ENSMUSG00000061469 AllianceGenome:MGI:3650740
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm12569
Summary
Orthologous to human MSANTD5 (Myb/SANT DNA binding domain containing 5). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Msantd5 in Genome Data Viewer
Location:
11 B1.3; 11 31.02 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (51111398..51130585)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (51220571..51239758)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_29415 Neighboring gene predicted gene, 53704 Neighboring gene pluripotency associated transcript 20 Neighboring gene STARR-positive B cell enhancer ABC_E5223 Neighboring gene Myb/SANT DNA binding domain containing 5 like Neighboring gene CDC like kinase 4 Neighboring gene collagen, type XXIII, alpha 1 Neighboring gene STARR-positive B cell enhancer mm9_chr11:51347850-51348150 Neighboring gene STARR-positive B cell enhancer ABC_E6980 Neighboring gene STARR-seq mESC enhancer starr_29416 Neighboring gene 5-phosphohydroxy-L-lysine phospholyase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
putative uncharacterized protein MSANTD5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378501.1 → NP_001365430.1  putative uncharacterized protein MSANTD5

    Status: VALIDATED

    Source sequence(s)
    AL645907
    UniProtKB/TrEMBL
    A0A338P6G8

  2. NM_001378502.1 → NP_001365431.1  putative uncharacterized protein MSANTD5

    Status: VALIDATED

    Source sequence(s)
    AL645907
    UniProtKB/TrEMBL
    A0A338P6G8
    Related
    ENSMUSP00000155969.2, ENSMUST00000126189.3

  3. NM_001378503.1 → NP_001365432.1  putative uncharacterized protein MSANTD5

    Status: VALIDATED

    Source sequence(s)
    AL645907
    UniProtKB/TrEMBL
    A0A338P6G8

  4. NM_001378504.1 → NP_001365433.1  putative uncharacterized protein MSANTD5

    Status: VALIDATED

    Source sequence(s)
    AL645907
    UniProtKB/TrEMBL
    A0A338P6G8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    51111398..51130585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030246459.1 → XP_030102319.1  putative uncharacterized protein MSANTD5 isoform X1

    UniProtKB/TrEMBL
    A0A338P6G8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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