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Tmem200c transmembrane protein 200C [ Mus musculus (house mouse) ]

Gene ID: 622645, updated on 28-Oct-2024

Summary

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Official Symbol
Tmem200cprovided by MGI
Official Full Name
transmembrane protein 200Cprovided by MGI
Primary source
MGI:MGI:3646281
See related
Ensembl:ENSMUSG00000095407 AllianceGenome:MGI:3646281
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6338; EG622645
Summary
Orthologous to human TMEM200C (transmembrane protein 200C). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in ovary adult (RPKM 3.0), frontal lobe adult (RPKM 2.6) and 14 other tissues See more
Orthologs
human all
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Genomic context

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See Tmem200c in Genome Data Viewer
Location:
17 E1.3; 17 39.36 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (69144084..69150133)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (68837136..68843138)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene L3MBTL4 histone methyl-lysine binding protein Neighboring gene peroxiredoxin 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_43112 Neighboring gene nucleophosmin 1 pseudogene Neighboring gene predicted gene, 38593 Neighboring gene predicted gene, 36392 Neighboring gene STARR-seq mESC enhancer starr_43113 Neighboring gene predicted gene, 36437

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
transmembrane protein 200C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206661.2 → NP_001193590.1  transmembrane protein 200C

    Status: VALIDATED

    Source sequence(s)
    CT573017
    Consensus CDS
    CCDS57107.1
    UniProtKB/TrEMBL
    J3QK46
    Related
    ENSMUSP00000137246.2, ENSMUST00000178545.3
    Conserved Domains (1) summary
    pfam10177
    Location:14 → 209
    DUF2371; uncharacterized conserved protein (DUF2371)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    69144084..69150133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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