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SNORD96A small nucleolar RNA, C/D box 96A [ Homo sapiens (human) ]

Gene ID: 619571, updated on 10-Oct-2023

Summary

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Official Symbol
SNORD96Aprovided by HGNC
Official Full Name
small nucleolar RNA, C/D box 96Aprovided by HGNC
Primary source
HGNC:HGNC:32758
See related
Ensembl:ENSG00000272296 AllianceGenome:HGNC:32758
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U96A
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Genomic context

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See SNORD96A in Genome Data Viewer
Location:
5q35.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (181241818..181241889, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181801770..181801841, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180668818..180668889, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23787 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180651177-180652174 Neighboring gene microRNA 4638 Neighboring gene tripartite motif containing 41 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23788 Neighboring gene receptor for activated C kinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23792 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180672476-180673404 Neighboring gene small nucleolar RNA, C/D box 95 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180673405-180674331 Neighboring gene uncharacterized LOC101928649 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:180674332-180675259 Neighboring gene tripartite motif containing 52

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of 13 novel human modification guide RNAs. Vitali P, et al. Nucleic Acids Res, 2003 Nov 15. PMID 14602913, Free PMC Article
  2. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. Dieci G, et al. Genomics, 2009 Aug. PMID 19446021

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • C/D box snoRNA U96a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002592.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AY349595
    Related
    ENST00000606577.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    181241818..181241889 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181801770..181801841 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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