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ADAT1 adenosine deaminase tRNA specific 1 [ Bos taurus (domestic cattle) ]

Gene ID: 618521, updated on 10-Oct-2024

Summary

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Official Symbol
ADAT1provided by VGNC
Official Full Name
adenosine deaminase tRNA specific 1provided by VGNC
Primary source
VGNC:VGNC:25637
See related
BGD:BT28965; Ensembl:ENSBTAG00000015669
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See ADAT1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (2870769..2921659, complement)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene carbohydrate sulfotransferase 6 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene transmembrane protein 231 Neighboring gene GABA type A receptor associated protein like 2 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene lysyl-tRNA synthetase 1 Neighboring gene TERF2 interacting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC142609

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-specific adenosine deaminase 1
NP_001075089.1
XP_024834342.1
XP_024834344.1
XP_024834348.1
XP_024834351.1
XP_024834352.1
XP_024834354.1
XP_024834356.1
XP_024834357.1
XP_024834361.1
XP_059732955.1
XP_059732956.1
XP_059732957.1
XP_059732958.1
XP_059732959.1
XP_059732960.1
XP_059732961.1
XP_059732962.1
XP_059732963.1
XP_059732964.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081620.1 → NP_001075089.1  tRNA-specific adenosine deaminase 1

    See identical proteins and their annotated locations for NP_001075089.1

    Status: PROVISIONAL

    Source sequence(s)
    BC133289
    UniProtKB/TrEMBL
    A0A3Q1LJI7, A2VDL0
    Related
    ENSBTAP00000059598.2, ENSBTAT00000069531.2
    Conserved Domains (1) summary
    pfam02137
    Location:63 → 450
    A_deamin; Adenosine-deaminase (editase) domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    2870769..2921659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059876981.1 → XP_059732964.1  tRNA-specific adenosine deaminase 1 isoform X14

  2. XM_059876980.1 → XP_059732963.1  tRNA-specific adenosine deaminase 1 isoform X12

    UniProtKB/TrEMBL
    A0AAA9SRT4
    Related
    ENSBTAP00000086783.1, ENSBTAT00000115960.1

  3. XM_024978580.2 → XP_024834348.1  tRNA-specific adenosine deaminase 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1LJI7, A0A3Q1LJR7
    Related
    ENSBTAP00000059715.2, ENSBTAT00000075501.2
    Conserved Domains (1) summary
    pfam02137
    Location:103 → 494
    A_deamin; Adenosine-deaminase (editase) domain

  4. XM_059876975.1 → XP_059732958.1  tRNA-specific adenosine deaminase 1 isoform X6

  5. XM_024978583.2 → XP_024834351.1  tRNA-specific adenosine deaminase 1 isoform X8

    UniProtKB/TrEMBL
    A0AAA9TH04
    Related
    ENSBTAP00000062302.2, ENSBTAT00000072333.2
    Conserved Domains (1) summary
    pfam02137
    Location:103 → 530
    A_deamin; Adenosine-deaminase (editase) domain

  6. XM_059876974.1 → XP_059732957.1  tRNA-specific adenosine deaminase 1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q1LQW9
    Related
    ENSBTAP00000062611.2, ENSBTAT00000073641.2

  7. XM_024978574.2 → XP_024834342.1  tRNA-specific adenosine deaminase 1 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SRJ1, A0AAA9TH04
    Related
    ENSBTAP00000087975.1, ENSBTAT00000132819.1
    Conserved Domains (1) summary
    pfam02137
    Location:103 → 493
    A_deamin; Adenosine-deaminase (editase) domain

  8. XM_024978586.2 → XP_024834354.1  tRNA-specific adenosine deaminase 1 isoform X10

    UniProtKB/TrEMBL
    A0A3Q1LYG8
    Conserved Domains (1) summary
    pfam02137
    Location:63 → 453
    A_deamin; Adenosine-deaminase (editase) domain

  9. XM_024978588.2 → XP_024834356.1  tRNA-specific adenosine deaminase 1 isoform X10

    UniProtKB/TrEMBL
    A0A3Q1LYG8
    Conserved Domains (1) summary
    pfam02137
    Location:63 → 453
    A_deamin; Adenosine-deaminase (editase) domain

  10. XM_059876979.1 → XP_059732962.1  tRNA-specific adenosine deaminase 1 isoform X10

  11. XM_059876978.1 → XP_059732961.1  tRNA-specific adenosine deaminase 1 isoform X10

  12. XM_059876977.1 → XP_059732960.1  tRNA-specific adenosine deaminase 1 isoform X10

  13. XM_059876976.1 → XP_059732959.1  tRNA-specific adenosine deaminase 1 isoform X7

  14. XM_024978589.2 → XP_024834357.1  tRNA-specific adenosine deaminase 1 isoform X11

    UniProtKB/TrEMBL
    A0A3Q1LJI7
    Conserved Domains (1) summary
    pfam02137
    Location:103 → 494
    A_deamin; Adenosine-deaminase (editase) domain

  15. XM_059876973.1 → XP_059732956.1  tRNA-specific adenosine deaminase 1 isoform X3

  16. XM_024978576.2 → XP_024834344.1  tRNA-specific adenosine deaminase 1 isoform X1

    UniProtKB/TrEMBL
    A0AAA9SRJ1, A0AAA9TH04
    Conserved Domains (1) summary
    pfam02137
    Location:103 → 493
    A_deamin; Adenosine-deaminase (editase) domain

  17. XM_024978584.2 → XP_024834352.1  tRNA-specific adenosine deaminase 1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q1LYG8
    Conserved Domains (1) summary
    pfam02137
    Location:85 → 461
    A_deamin; Adenosine-deaminase (editase) domain

  18. XM_059876972.1 → XP_059732955.1  tRNA-specific adenosine deaminase 1 isoform X2

  19. XM_024978593.2 → XP_024834361.1  tRNA-specific adenosine deaminase 1 isoform X13

    UniProtKB/TrEMBL
    A0A3Q1LJI7
    Conserved Domains (1) summary
    pfam02137
    Location:103 → 494
    A_deamin; Adenosine-deaminase (editase) domain
Nucleotide Protein Strain
Heading Accession and Version

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