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SDC3 syndecan 3 [ Bos taurus (domestic cattle) ]

Gene ID: 618198, updated on 17-Aug-2024

Summary

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Official Symbol
SDC3provided by VGNC
Official Full Name
syndecan 3provided by VGNC
Primary source
VGNC:VGNC:34380
See related
BGD:BT14306; Ensembl:ENSBTAG00000026676
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Annotation information
Annotation category: suggests misassembly
Orthologs
human mouse all
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Genomic context

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See SDC3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (122667127..122702779)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 1 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene uncharacterized LOC132343441 Neighboring gene uncharacterized LOC132343442

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic Variants in SDC3 Gene are Significantly Associated with Growth Traits in Two Chinese Beef Cattle Breeds. Huang YZ, et al. Anim Biotechnol, 2016. PMID 27119984
  2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001206531.2 → NP_001193460.1  syndecan-3 precursor

    Status: VALIDATED

    Source sequence(s)
    NKLS02000002
    UniProtKB/TrEMBL
    F1MP76
    Related
    ENSBTAP00000037854.6, ENSBTAT00000038035.6
    Conserved Domains (1) summary
    pfam01034
    Location:399 → 440
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    122667127..122702779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials