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SUPT3H SPT3 homolog, SAGA and STAGA complex component [ Bos taurus (domestic cattle) ]

Gene ID: 618133, updated on 10-Oct-2024

Summary

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Official Symbol
SUPT3Hprovided by VGNC
Official Full Name
SPT3 homolog, SAGA and STAGA complex componentprovided by VGNC
Primary source
VGNC:VGNC:35479
See related
BGD:BT14710; Ensembl:ENSBTAG00000032887
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SUPT3H in Genome Data Viewer
Location:
chromosome: 23
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (18225578..18645089, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112443828 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene RUNX family transcription factor 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene transfer RNA glycine (anticodon UCC)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation protein SPT3 homolog
Names
suppressor of Ty 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105008.1 → NP_001098478.1  transcription initiation protein SPT3 homolog

    See identical proteins and their annotated locations for NP_001098478.1

    Status: PROVISIONAL

    Source sequence(s)
    BC149055
    UniProtKB/TrEMBL
    A0A3Q1LP47, A6QNX9, F6QUQ0
    Related
    ENSBTAP00000074033.2, ENSBTAT00000083911.2
    Conserved Domains (2) summary
    pfam02269
    Location:24 → 116
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit
    pfam12316
    Location:290 → 357
    Dsh_C; Segment polarity protein dishevelled (Dsh) C terminal

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    18225578..18645089 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024983744.2 → XP_024839512.1  transcription initiation protein SPT3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LP47, A6QNX9, F6QUQ0
    Conserved Domains (2) summary
    pfam02269
    Location:24 → 116
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit
    pfam12316
    Location:290 → 357
    Dsh_C; Segment polarity protein dishevelled (Dsh) C terminal

  2. XM_024983745.2 → XP_024839513.1  transcription initiation protein SPT3 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LP47, A6QNX9, F6QUQ0
    Conserved Domains (2) summary
    pfam02269
    Location:24 → 116
    TFIID-18kDa; Transcription initiation factor IID, 18kD subunit
    pfam12316
    Location:290 → 357
    Dsh_C; Segment polarity protein dishevelled (Dsh) C terminal

  3. XM_059880441.1 → XP_059736424.1  transcription initiation protein SPT3 homolog isoform X1

    UniProtKB/TrEMBL
    A6QNX9, F6QUQ0

  4. XM_059880446.1 → XP_059736429.1  transcription initiation protein SPT3 homolog isoform X1

    UniProtKB/TrEMBL
    A6QNX9, F6QUQ0
    Related
    ENSBTAP00000058665.2, ENSBTAT00000085523.2

  5. XM_059880444.1 → XP_059736427.1  transcription initiation protein SPT3 homolog isoform X3

  6. XM_059880442.1 → XP_059736425.1  transcription initiation protein SPT3 homolog isoform X2

    Related
    ENSBTAP00000043962.5, ENSBTAT00000046690.5

  7. XM_059880443.1 → XP_059736426.1  transcription initiation protein SPT3 homolog isoform X3

  8. XM_059880445.1 → XP_059736428.1  transcription initiation protein SPT3 homolog isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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