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GARIN5A golgi associated RAB2 interactor 5A [ Bos taurus (domestic cattle) ]

Gene ID: 617892, updated on 4-Oct-2024

Summary

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Official Symbol
GARIN5Aprovided by VGNC
Official Full Name
golgi associated RAB2 interactor 5Aprovided by VGNC
Primary source
VGNC:VGNC:57045
See related
Ensembl:ENSBTAG00000020082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
FAM71E1
Orthologs
human mouse all
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Genomic context

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See GARIN5A in Genome Data Viewer
Location:
chromosome: 18
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (56607980..56613651, complement)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342718 Neighboring gene Spi-B transcription factor Neighboring gene myosin binding protein C2 Neighboring gene ER membrane protein complex subunit 10 Neighboring gene uncharacterized LOC100335819 Neighboring gene Josephin domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 5A
Names
Golgi associated RAB2 interactor protein 5A
family with sequence similarity 71 member E1
protein FAM71E1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001205375.2 → NP_001192304.1  Golgi-associated RAB2 interactor protein 5A

    See identical proteins and their annotated locations for NP_001192304.1

    Status: PROVISIONAL

    Source sequence(s)
    BC109767
    UniProtKB/Swiss-Prot
    Q32L49
    UniProtKB/TrEMBL
    F1N3S9
    Related
    ENSBTAP00000026757.6, ENSBTAT00000026757.7
    Conserved Domains (1) summary
    pfam12480
    Location:102 → 162
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    56607980..56613651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010815097.4 → XP_010813399.1  Golgi-associated RAB2 interactor protein 5A isoform X1

    UniProtKB/TrEMBL
    F1N3S9
    Conserved Domains (1) summary
    pfam12480
    Location:114 → 174
    DUF3699; Protein of unknown function (DUF3699)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32L49.2 GenPept UniProtKB/Swiss-Prot:Q32L49

Gene LinkOut

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