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PIP4P1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 [ Bos taurus (domestic cattle) ]

Gene ID: 615077, updated on 4-Oct-2024

Summary

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Official Symbol
PIP4P1provided by VGNC
Official Full Name
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1provided by VGNC
Primary source
VGNC:VGNC:32909
See related
BGD:BT26982; Ensembl:ENSBTAG00000002748
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
TMEM55B
Orthologs
human mouse all
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Genomic context

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See PIP4P1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (26667249..26670812)

Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene ribonuclease A family member 10 (inactive) Neighboring gene purine nucleoside phosphorylase Neighboring gene purine nucleoside phosphorylase Neighboring gene apurinic/apyrimidinic endodeoxyribonuclease 1 Neighboring gene O-sialoglycoprotein endopeptidase Neighboring gene kelch like family member 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC139957

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase
Names
transmembrane protein 55B
NP_001069827.1
XP_005211568.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076359.1 → NP_001069827.1  type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase

    See identical proteins and their annotated locations for NP_001069827.1

    Status: PROVISIONAL

    Source sequence(s)
    BC118333
    UniProtKB/TrEMBL
    Q17QI9
    Conserved Domains (1) summary
    pfam09788
    Location:4 → 270
    Tmemb_55A; Transmembrane protein 55A

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    26667249..26670812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005211511.4 → XP_005211568.1  type 1 phosphatidylinositol 4,5-bisphosphate 4-phosphatase isoform X1

    See identical proteins and their annotated locations for XP_005211568.1

    UniProtKB/TrEMBL
    F6RQE7
    Related
    ENSBTAP00000003561.5, ENSBTAT00000003561.6
    Conserved Domains (1) summary
    pfam09788
    Location:4 → 277
    Tmemb_55A; Transmembrane protein 55A
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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