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DX03_RS12780 lytic transglycosylase domain-containing protein [ Stenotrophomonas rhizophila ]

Gene ID: 61476841, updated on 13-May-2024

Summary

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Gene symbol
DX03_RS12780
Gene description
lytic transglycosylase domain-containing protein
Locus tag
DX03_RS12780
Gene type
protein coding
Organism
Stenotrophomonas rhizophila (strain: DSM 14405, nat-host: Brassica napus, type-material: type strain of Stenotrophomonas rhizophila)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas
Old locus tag
DX03_12995
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Genomic context

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NZ_CP007597.1Genomic Context describing neighboring genes Neighboring gene cytochrome c1 Neighboring gene cytochrome bc complex cytochrome b subunit Neighboring gene ubiquinol-cytochrome c reductase iron-sulfur subunit Neighboring gene tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Neighboring gene ABC transporter permease Neighboring gene ABC transporter ATP-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP007597.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. 'Holy' proteins. II: The soluble lytic transglycosylase. Dijkstra BW, et al. Curr Opin Struct Biol, 1994 Dec. PMID 7712284
  2. A family of lysozyme-like virulence factors in bacterial pathogens of plants and animals. Mushegian AR, et al. Proc Natl Acad Sci U S A, 1996 Jul 9. PMID 8692991, Free PMC Article
  3. A conserved domain in putative bacterial and bacteriophage transglycosylases. Koonin EV, et al. Trends Biochem Sci, 1994 Mar. PMID 8203016

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
lytic transglycosylase domain-containing protein
WP_038689283.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP007597.1 Reference assembly

    Range
    2948167..2949111 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_038689283.1 lytic transglycosylase domain-containing protein [Stenotrophomonas rhizophila]

    See identical proteins and their annotated locations for WP_038689283.1

    Conserved Domains (2) summary
    COG0741
    Location:172 → 307
    MltE; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) [Cell wall/membrane/envelope biogenesis]
    cd00254
    Location:200 → 304
    LT_GEWL; Lytic Transglycosylase (LT) and Goose Egg White Lysozyme (GEWL) domain. Members include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as, the eukaryotic "goose-type" lysozymes (GEWL). LTs catalyze ...
Nucleotide Protein
Heading Accession and Version