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SNX8 sorting nexin 8 [ Bos taurus (domestic cattle) ]

Gene ID: 614344, updated on 12-Oct-2024

Summary

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Official Symbol
SNX8provided by VGNC
Official Full Name
sorting nexin 8provided by VGNC
Primary source
VGNC:VGNC:35114
See related
BGD:BT29242; Ensembl:ENSBTAG00000013708
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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See SNX8 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 25 NC_037352.1 (40930412..40969289)

Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-12019 Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene nudix hydrolase 1 Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene mitochondrial rRNA methyltransferase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037352.1 Chromosome 25 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC137391

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046533.2 → NP_001039998.1  sorting nexin-8

    See identical proteins and their annotated locations for NP_001039998.1

    Status: PROVISIONAL

    Source sequence(s)
    BC112867
    UniProtKB/Swiss-Prot
    Q2KHV6
    UniProtKB/TrEMBL
    A0A3Q1MTQ3
    Related
    ENSBTAP00000018213.3, ENSBTAT00000018213.5
    Conserved Domains (2) summary
    cd06866
    Location:70 → 173
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:190 → 435
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037352.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    40930412..40969289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059881421.1 → XP_059737404.1  sorting nexin-8 isoform X4

  2. XM_024985024.2 → XP_024840792.1  sorting nexin-8 isoform X4

    UniProtKB/TrEMBL
    A0A3Q1MTQ3
    Conserved Domains (2) summary
    cd06866
    Location:22 → 125
    PX_SNX8_Mvp1p_like; The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p
    cd07597
    Location:142 → 387
    BAR_SNX8; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8

  3. XM_059881422.1 → XP_059737405.1  sorting nexin-8 isoform X4

  4. XM_059881418.1 → XP_059737401.1  sorting nexin-8 isoform X1

    UniProtKB/TrEMBL
    A0AAA9THQ6
    Related
    ENSBTAP00000096421.1, ENSBTAT00000099528.1

  5. XM_059881419.1 → XP_059737402.1  sorting nexin-8 isoform X2

  6. XM_059881420.1 → XP_059737403.1  sorting nexin-8 isoform X3

    Related
    ENSBTAP00000073738.2, ENSBTAT00000070621.2
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2KHV6.1 GenPept UniProtKB/Swiss-Prot:Q2KHV6

Gene LinkOut

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Molecular Biology Databases
Research Materials