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ypdK membrane protein YpdK [ Pectobacterium polaris ]

Gene ID: 61411346, updated on 1-Aug-2024

Summary

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Gene symbol
ypdK
Gene description
membrane protein YpdK
Locus tag
BJK05_RS22625
Gene type
protein coding
Organism
Pectobacterium polaris (strain: NIBIO1392, nat-host: Solanum tuberosum)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium
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Genomic context

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NZ_CP017482.1Genomic Context describing neighboring genes Neighboring gene iron ABC transporter permease Neighboring gene ABC transporter substrate-binding protein Neighboring gene LLM class flavin-dependent oxidoreductase Neighboring gene A24 family peptidase Neighboring gene type II secretion system protein N Neighboring gene type II secretion system protein GspM

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP017482.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Small membrane proteins found by comparative genomics and ribosome binding site models. Hemm MR, et al. Mol Microbiol, 2008 Dec. PMID 19121005, Free PMC Article
  2. Pectobacterium polaris sp. nov., isolated from potato (Solanum tuberosum). Dees MW, et al. Int J Syst Evol Microbiol, 2017 Dec. PMID 29068285

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
membrane protein YpdK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP017482.1 Reference assembly

    Range
    2168458..2168532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_099606229.1 MULTISPECIES: membrane protein YpdK [Pectobacteriaceae]

    UniProtKB/TrEMBL
    A0A2U1TLE8, A0A3A4BBM7, A0A6I6XF01, A0A7V8PKU1, A0A7V8TAP1, A0A7W2E3C9, A0A8B3FIS9, A0A9X8JM87, A0AAE9T3A3
Nucleotide Protein
Heading Accession and Version