LSM8 LSM8 homolog, U6 small nuclear RNA associated [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: LSM8provided by VGNC
Official Full Name: LSM8 homolog, U6 small nuclear RNA associatedprovided by VGNC
Primary source: VGNC:VGNC:31060
See related: Ensembl:ENSBTAG00000012649
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as: NAA38
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2023_09	current	ARS-UCD2.0 (GCF_002263795.3)	4	NC_037331.1 (82786342..82807241)

Chromosome 4 - NC_037331.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of U4/U6 x U5 tri-snRNP complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of U6 snRNP	IEA Inferred from Electronic Annotation more info	PubMed
part_of precatalytic spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: LSM8 homolog, U6 small nuclear RNA associated

Names: U6 snRNA-associated Sm-like protein LSm8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001034740.2 → NP_001029912.1 LSM8 homolog, U6 small nuclear RNA associated

See identical proteins and their annotated locations for NP_001029912.1

Status: PROVISIONAL

Source sequence(s)

BC102499

UniProtKB/Swiss-Prot

Q3ZCE0

Conserved Domains (1) summary

cd01727
Location:3 → 92

LSm8; Like-Sm protein 8

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

Range

82786342..82807241

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_059885728.1 → XP_059741711.1 LSM8 homolog, U6 small nuclear RNA associated isoform X2
XM_024990883.2 → XP_024846651.1 LSM8 homolog, U6 small nuclear RNA associated isoform X2

Conserved Domains (1) summary

cd01727
Location:3 → 67

LSm8; Like-Sm protein 8
XM_059885727.1 → XP_059741710.1 LSM8 homolog, U6 small nuclear RNA associated isoform X1

UniProtKB/TrEMBL

A0AAF6YXP1
XM_059885726.1 → XP_059741709.1 LSM8 homolog, U6 small nuclear RNA associated isoform X1

UniProtKB/TrEMBL

A0AAF6YXP1

Related

ENSBTAP00000016780.3, ENSBTAT00000016780.4